Showing : extracting contrasts • reset
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Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise deseq2 extracting contrasts resultsnames results deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by • 0
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Understanding Contrasts when analyzing DESeq2 results
deseq2 extracting contrasts rnaseq interaction term
updated 6.4 years ago by ★ 1.4k • written 6.4 years ago by ▴ 10
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LRT test multiple comparisons
deseq2 extracting contrasts
7.8 years ago laianavarromartin ▴ 20
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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